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Thread: MDLP K10 Ancient Roots

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    Default MDLP K10 Ancient Roots

    Another interesting beta, similar to K12 but for ancient roots.

    Components are slightly different and as follows :

    ENF
    MHG
    OOA-Basal
    East-Eurasian
    Amerindian
    Archaic-Man
    African
    Oceanian
    ASA
    ANE


    DIY : https://drive.google.com/file/d/0B6n...FOdS00Qm8/view (open k10.par and change the k10 files into k10.txt) It should look like this :
    Spoiler!


    Oracle4 file (dots replaced by commas) : MDLP K10 ANCIENT ROOTS.txt



    (The Oracle4 takes a lot of time to compute. Mine is still running, i ll post the results later)

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    24.71% ENF
    8.71% MHG
    34.54% OOA-Basal
    4.29% East-Eurasian
    1.96% Amerindian
    0.53% Archaic-Man
    1.16% African
    1.87% Oceanian
    1.65% ASA
    20.58% ANE

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    0.27% ENF
    0.00% MHG
    2.99% OOA-Basal
    80.91% East-Eurasian
    3.02% Amerindian
    0.00% Archaic-Man
    0.28% Human_root
    10.04% Oceanian
    1.71% ASA
    0.77% ANE

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    20.47% ENF
    17.33% MHG
    24.14% OOA-Basal
    5.50% East-Eurasian
    4.17% Amerindian
    0.54% Archaic-Man
    1.15% Human_root
    1.18% Oceanian
    1.47% ASA
    24.04% ANE

    Oracle:

    Spoiler!

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    Default

    MHG is Scandinavian hunter-gatherer Motala(SHG), which is a 'little' bit different.

    Havent looked at OOA,

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    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    23.58% ENF
    16.73% MHG
    28.19% OOA-Basal
    2.31% East-Eurasian
    1.88% Amerindian
    0.38% Archaic-Man
    1.74% Human_root
    1.61% Oceanian
    1.14% ASA
    22.44% ANE


    [1,] "Nordic-IA" "10.5381"
    [2,] "Sintashta" "14.5632"
    [3,] "Esperstedt_MN" "14.9547"
    [4,] "Karsdorf_LN" "15.1611"
    [5,] "Hungary-Vatya" "15.776"
    [6,] "Baalberge_MN" "18.5215"
    [7,] "Andronovo" "18.8859"
    [8,] "HungaryGamba_IA" "20.2456"
    [9,] "Bell_Beaker_LN" "20.4395"
    [10,] "EuropeanIronAge" "21.7789"
    [11,] "SwedenSkoglund_MN_lessThan20K" "22.0381"
    [12,] "Spain_MN" "22.7184"
    [13,] "BenzigerodeHeimburg_LN" "25.4276"
    [14,] "Nordic-BattleAxe" "25.4282"
    [15,] "Stuttgart" "27.3821"
    [16,] "AG2" "27.4308"
    [17,] "HungaryGamba_BA" "28.7227"
    [18,] "Bell_Beaker_Nordic" "30.06"
    [19,] "Unetice_Poland" "30.7371"
    [20,] "LBK_EN" "31.1517"


    [1,] "39.9% EuropeanIronAge + 60.1% Sintashta" "2.4195"
    [2,] "32% EuropeanIronAge + 68% Nordic-IA" "2.7185"
    [3,] "53.6% Andronovo + 46.4% EuropeanIronAge" "2.7773"
    [4,] "60.4% EuropeanIronAge + 39.6% Russia-Yamnaya" "2.8349"
    [5,] "51.6% Bell_Beaker_LN + 48.4% EuropeanIronAge" "2.9575"
    [6,] "53.9% EuropeanIronAge + 46.1% Nordic-BattleAxe" "3.4558"
    [7,] "22% Basal_Eurasian + 78% Nordic-IA" "4.0356"
    [8,] "50.4% Esperstedt_MN + 49.6% Karsdorf_LN" "4.0804"
    [9,] "52.2% HungaryGamba_IA + 47.8% SwedenSkoglund_MN_lessThan20K" "4.1742"
    [10,] "11.1% Near_East + 88.9% Nordic-IA" "4.3628"
    [11,] "68% Karsdorf_LN + 32% LBK_EN" "4.3785"
    [12,] "73.8% Baalberge_MN + 26.2% Corded_Ware_LN" "4.4624"
    [13,] "15.2% Near_East + 84.8% Sintashta" "4.6126"
    [14,] "64.3% EuropeanIronAge + 35.7% Nordic-LN" "4.6904"
    [15,] "77.3% Baalberge_MN + 22.7% Yamnaya" "4.7196"
    [16,] "68.1% Baalberge_MN + 31.9% Unetice_EBA" "4.7618"
    [17,] "71.2% Karsdorf_LN + 28.8% Starcevo_EN" "4.7768"
    [18,] "46% BenzigerodeHeimburg_LN + 54% EuropeanIronAge" "4.8563"
    [19,] "65.3% Karsdorf_LN + 34.7% Stuttgart" "5.0143"
    [20,] "60.8% Karsdorf_LN + 39.2% Spain_MN" "5.0668"


    The Oracle with modern & ancient populations (it takes sooo much time)

    Least-squares method.

    Using 1 population approximation:
    1 English_Cornwall_GBR @ 8,490077
    2 French_Basque @ 8,561083
    3 Belgian @ 9,431071
    4 English_Kent_GBR @ 9,450936
    5 Basque_Spanish @ 9,498908
    6 French @ 9,624333
    7 British @ 9,694441
    8 Spanish_Cantabria_IBS @ 9,870125
    9 CEU @ 9,922897
    10 French_South @ 10,019612
    11 Orcadian @ 10,036254
    12 Biaka_Pygmies @ 10,121046
    13 Mixed_European @ 10,204013
    14 Czech @ 10,255422
    15 Basque_French @ 10,295627
    16 Welsh @ 10,370495
    17 Croat @ 10,458538
    18 Icelandic @ 10,490532
    19 Nordic-IA @ 10,559912
    20 Spanish_Pais_Vasco_IBS @ 10,616932

    Spoiler!




    Gaussian

    Spoiler!
    Last edited by Petalpusher; 06-26-2015 at 06:58 PM.

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    Don't mind the "12 Biaka_Pygmies @ 10,12104" it's a bug obviously, but i don't know what's the deal with this "Cornwall" if Mazik gets it.

    Everything should increase a little compared to K12 in different proportions, because the "ANE-Siberian" has been redistributed and probably some other things.

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    Quote Originally Posted by Graham View Post
    MHG is Scandinavian hunter-gatherer Motala(SHG), which is a 'little' bit different.

    Havent looked at OOA,
    OOA = out of africa?

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    I ran the test on GEDMatch but it looks different from the ones being posted here?

    # Population Percent
    1 East_European 26.43
    2 Paleo_Mediterranean 25.32
    3 Caucasian 16.22
    4 British 13.56
    5 Iberian 8.07
    6 Paleo_Balkanic 2.59
    7 South_Central_Asian 2.58
    8 Volga_Finnic 2.52
    9 Altaic_Turkic 1.89


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    Quote Originally Posted by Polk View Post
    I ran the test on GEDMatch but it looks different from the ones being posted here?
    It's not on Gedmatch, you need the R software and the files in first post.

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